FastQCFastQC Report
Sun 21 May 2023
EGAF00007934827

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934827
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences529968
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT35790.6753237931346798No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23130.436441445521239No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10420.19661564471817167No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10160.19170968813211364No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9880.18642635027020502No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA9260.17472753071883584No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5700.10755366361742595No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC5690.10736497297950064No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC5510.10396854149684509No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)