FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934828

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934828
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419000
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG12090.2885441527446301No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10720.2558472553699284No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10600.25298329355608595No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9740.2324582338902148No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8750.20883054892601433No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT7570.18066825775656326No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6780.16181384248210023No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6670.15918854415274464No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG6420.1532219570405728No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5450.13007159904534607No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG5330.12720763723150358No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5220.12458233890214798No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT5120.12219570405727924No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4820.11503579952267304No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4660.11121718377088306No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4660.11121718377088306No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)