FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934829

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934829
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419000
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG14080.3360381861575179No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11880.28353221957040575No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG11190.26706443914081146No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA11180.2668257756563246No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11010.26276849642004774No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10470.24988066825775657No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG10290.24558472553699284No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8560.20429594272076373No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7910.18878281622911694No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA7470.1782816229116945No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG7360.1756563245823389No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6910.1649164677804296No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6810.16252983293556086No Hit
GAACCGATCTACGCTACCATCGACGACCTGG5730.13675417661097852No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5710.13627684964200476No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5420.12935560859188544No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4720.11264916467780428No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4510.10763723150357994No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4440.10596658711217184No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC4420.10548926014319808No Hit

[OK]Adapter Content

Adapter graph