FastQCFastQC Report
Wed 31 May 2023
EGAF00007934830

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934830
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395916
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG11830.2988007557158589No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10290.2599036159185282No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9990.25232625102294426No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG9020.22782610452722293No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8300.20964042877782155No Hit
GTAGTTCGGGTCGATATCTGCGACACCTTCGGCGTCCAGCATTT7510.18968670121945058No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6500.16417623940431808No Hit
CTGACCAACACCGGAGAAGTCGCCAACGCCTTTGTTAGCAGAGG6300.15912466280726215No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG5800.1464957213146223No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5160.1303306762040433No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4930.12452136311742895No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG4860.12275331130845936No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG4580.11568110407258106No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG4560.11517594641287546No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC4190.10583052970832196No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC4150.10482021438891077No Hit
GTCTTCCGGGCCTTCCTCACCCGGGCGACGGTGCGCGCGGTGAC4040.10204184726053No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA3960.10002121662170764No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)