FastQCFastQC Report
Wed 31 May 2023
EGAF00007934831

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934831
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences395916
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG57281.4467715373968215No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT11460.2894553390113054No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10410.26293456187676173No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10270.2593984582588226No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9800.2475272532557411No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9700.24500146495721312No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG9380.23691894240192363No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8310.20989300760767435No Hit
CCGGATTTTGAACAGAACATTGCGACCACCA7580.19145475302842016No Hit
ACTAGCCCGGAAGAACCGATCTACACCCAGG6640.16771234302225724No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6580.16619687004314046No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA6530.16493397589387648No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6090.1538205073803534No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC4990.12603683609654573No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA4970.12553167843684016No Hit
GAACCGATCTACGCTACCATCGACGACCTGG4840.12224815364875379No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG4700.11871205003081461No Hit
GATGGCGAACACCGTCGTCACCGTGCCCACC4310.10886147566655555No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG4070.10279958375008841No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA4050.1022944260903828No Hit

[OK]Adapter Content

Adapter graph