FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934836

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934836
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences411921
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13390.32506232991277456No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12160.295202235380085No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC8630.2095061917212281No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7450.18085992216954222No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6490.15755448253427234No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6450.15658342254946944No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6000.14565899772043667No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)