FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934838

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934838
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425610
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10120.23777636803646532No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT9350.2196846878597777No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT8220.19313455980827518No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7280.17104861257959164No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6850.160945466506896No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6220.1461431827259698No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5740.13486525222621648No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5600.1315758558304551No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5110.1200629684452903No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT4700.11042973614341768No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT4630.108785037945537No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)