FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934839

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934839
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences425610
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22490.5284180352905242No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13490.3169568384201499No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13130.30849839054533496No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA9600.22555860999506594No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9090.213575808839078No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT8860.2081718004746129No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7740.1818566293085219No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7600.1785672329127605No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5970.14026926059068162No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5970.14026926059068162No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4990.11724348582035198No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG4410.10361598646648339No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)