FastQCFastQC Report
Sun 21 May 2023
EGAF00007934841

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934841
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences383845
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG64161.671508030585262No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA27510.7166955411689615No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG16560.43142414255754274No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC15170.3952116088525316No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT14630.3811434302908726No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA13160.34284672198413424No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA11310.2946501843191913No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA11190.2915239224166004No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG9940.258958694264612No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9620.250621995857703No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8930.23264598991780536No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8840.2303012934908622No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7970.20763589469707824No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6690.1742891010694421No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG6570.1711628391668512No Hit
ACCGCGTCCGGTGAAGAAGTAGCAGTTCTGA6350.16543135901210124No Hit
ACCGCATCCGGTGAAGAAGTTGCGGTACTGA6230.16230509710951035No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5840.15214474592608995No Hit
ACCGCATCCGGTGAAGAAGTAGCTGTTCTGT5760.1500605713243627No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC5670.14771587489741952No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5660.14745535307220362No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5510.143547525693965No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.1396396983157264No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5300.13807656736443097No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG5270.1372950018887832No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4980.1297398689575219No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4700.12244525785147652No Hit
GCAGCTCACTCCCGTTCCGGCTCCGTGAGCC4610.12010056142453335No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC4190.10915864476546523No Hit
CGTATGCCGACTACTAGCACCGCTTCCCAGA4100.10681394833852206No Hit
CGCGCATCTATCGGTTCTAAAAGCGTCTCTA4090.10655342651330615No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA3970.10342716461071526No Hit
GCTCTGGTCTCCGCCATGGAACGCACCGAAC3960.10316664278549935No Hit
GCCGTCCGTTATTTCCGCGGCCGCGGCTCCG3870.1008219463585562No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)