FastQCFastQC Report
Wed 31 May 2023
EGAF00007934842

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934842
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences398524
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG17170.4308397988577853No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG16710.419297206692696No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT13980.3507944314520581No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12020.3016129517921129No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11800.29609258162620067No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC10840.27200369362949284No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT10600.2659814716303159No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10120.25393702763196196No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC9200.2308518433017836No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8630.2165490660537383No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA8060.202246288805693No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG8020.20124258513916352No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6590.1653601790607341No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6410.16084351256135138No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6260.15707962381186577No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG6090.15281388322911543No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG5880.1475444389798356No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5650.141773142897291No Hit
AGACGCTAGATGAGGAGCGTACGGAGCTGAACACAGATTTAAAT5520.13851110598107014No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5390.1352490690648493No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5010.1257138842328191No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA4840.12144814365006874No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT4800.12044443998353926No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4450.1116620329014062No Hit
ACCCGGGCGCTGGCCTTCTGCACCCCAGCTGAAACGGGACAGGG4310.10814907006855295No Hit
GTTACGTTCGAAACGAATCAGATCGGTACCCTGCGCCATAGAGC4310.10814907006855295No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG4220.1058907368188616No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT4180.10488703315233211No Hit
CAGGTTGTGAGATGCACGGGTACGACGGTCTTCCGGGGTATCGT4160.10438518131906736No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4040.10137407031947888No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG4040.10137407031947888No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA4020.10087221848621414No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)