FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934845

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934845
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413028
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61211.4819818511093679No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19140.46340683924576537No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG18030.4365321479415439No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11410.27625245746051114No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG10340.2503462235005859No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG9880.23920896404117878No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9820.2377562780247344No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9570.23170341962288268No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9510.2302507336064383No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC9150.22153461750777187No Hit
CTGCAGGCGCCGAAAACTCGCTCCACCACCA8280.200470670269328No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC7980.19320724018710597No Hit
CACGCAGAACTGAAATCCCTGACCGGTGCGG7310.17698557967014342No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6820.16512197720251412No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC6560.15882700446458836No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6410.15519528942347732No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6230.15083723137414412No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA6200.15011088836592193No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6020.1457528303165887No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC5880.14236322961155176No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5470.13243654183251496No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5330.12904694112747803No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5300.12832059811925584No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5030.121783511045256No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC5030.121783511045256No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC4980.12057293936488568No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG4770.11548853830733025No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT4770.11548853830733025No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4660.1128252806105155No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC4620.11185682326621924No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG4610.11161470893014518No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4570.11064625158584891No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG4210.10193013548718247No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)