FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934846

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934846
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences419385
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA32910.7847204835652205No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA29950.7141409444782241No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG26270.6263934093970934No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG20860.4973949950522789No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG20490.48857255266640437No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG19070.45471344945575065No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG17950.4280076779093196No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG17310.4127472370256447No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG15770.3760268011493019No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG14640.34908258521406343No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC12680.30234748500780906No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG12030.2868485997353267No Hit
CTGAACGACGTGACGGGTCTGTACAGTGTCAGACGGGGCCAGCG11950.28494104462486736No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11940.2847026002360599No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11810.2816028231815635No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG11010.26252727207696985No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10820.25799682868962887No Hit
TACGTGACGGGTCTGCACGGTGTCAGACGGCGCCAGCGGGTTGG10520.25084349702540626No Hit
CTGCACTACGTGACGGGTCTGGACGGTATCAGACGGCGCCAGCG10150.2420210546395317No Hit
CTGGACTACGTGACGCGTCTGAACGGTATCGCTCGGCGCCAGCG9650.2300988351991607No Hit
TGCCCCATTTAAATCAGCCTGTCACTGGACAACGTGACGGGTCT9340.22270705914613065No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9260.22079950403567128No Hit
GGAGCTCGGACCTACGTTGGTAACAGTGAACACGTCCGGACGCG8530.20339306365272958No Hit
CATGGTATCACCTGGAACAACCTGGCTAGTGTGGCCGGTTTCAG8290.19767039832135153No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG8230.19623973198850697No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA7910.18860951154666952No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA7840.1869404008250176No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT7840.1869404008250176No Hit
AACGCTGGATTCGGTACGGGAGTGGTAGTTTTTTACGTGACGAG7620.18169462427125432No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7490.1785948472167579No Hit
GTTGGTAGCGCCGGTTTCCACCGCGGTCAGCGCCGGAACTTCTT7470.17811795843914305No Hit
GTCGCCCGGTACTACCTGGGAGGTGTGGCCAGTTTCAGCAGCGG7390.17621040332868365No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7240.17263373749657238No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7140.17024929360849816No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT7110.16953396044207591No Hit
GATGCTGATGGAGCGACGAATGCGGAAACCTTGCGGAGTACGAG7070.1685801828868462No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6760.1611884068338162No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC6730.16047307366739394No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG6310.15045840933748225No Hit
CAGCGTCGGAATGGAGCGACGGGTCTTGATACCGTTGCCGCTTT5900.14068218939637803No Hit
GTCTTCTTTGGTTACGTCCTTAACAGTCAGGTTCTGACGACCGC5830.1390130786747261No Hit
GATTTCCGGGGTTTTGACAGAACGCAGCAGGTCAGCGATGGCCG5390.1285215255671996No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5010.11946063879251761No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA4760.1134995290723321No Hit
TGGCTGTTCGTTATCTACCTCGATGATTGCAACGCACGCACCAC4600.10968441885141338No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT4280.10205419840957593No Hit
CAGGAAGTTTTCTACAGAGGATTCAGTGCGAGAGTGGTAGTTTT4230.10086197646553882No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)