FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934848

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934848
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429853
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14850.3454669386976478No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6350.14772491991448242No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG5560.12934654405110582No Hit
TTTCACGCATTTCTTGCCGTCCACTACGTAAACGCCGGACGGCA5500.12795071803616587No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5320.12376323999134586No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT4540.105617501797126No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4310.1002668354065227No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)