FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934849

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934849
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences429853
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG22080.5136639734979167No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14620.3401162723070445No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6420.14935338359857905No Hit
TCCTACACCAACGGCAAACTGACTATCACCC5520.12841599337447918No Hit
CCGAAACGTCTGAACCTGTACATCGATGGTG5400.1256243413445992No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5290.1230653269838759No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA4820.11213135653351262No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG4670.10864179149616263No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)