FastQCFastQC Report
Sun 21 May 2023
EGAF00007934854

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934854
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences464356
Sequences flagged as poor quality0
Sequence length44
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT36880.7942182291173152No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC31330.674697861123793No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG26120.562499461619964No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG22330.4808810481613245No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA22320.4806656961469218No Hit
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG21100.4543927503897871No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA19790.42618163650302787No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA17670.3805270094496464No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT17480.37643532117599426No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT17010.3663137764990654No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC16870.363298848297427No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT15710.33831801462670885No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT15050.3241047816761278No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG14290.30773802858151933No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG14170.30515380440868645No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT13650.2939554996597438No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA12380.2666057938305955No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC12230.26337551361455436No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11910.2564842491536666No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT11720.25239256088001444No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11710.25217720886561173No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG10890.23451834368458682No Hit
ACGACGACCGCCGTCGCCCTGACCACGTGGGCCGGTGGACGGAC10750.23150341548294845No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT10750.23150341548294845No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA10690.23021130339653198No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG10360.22310468692124147No Hit
AGTTTCGCTACCGTTGAAGTGCATGTAGGTGGTGCGGGTTTCCA9950.21427525433072903No Hit
ACCGCCATGAGTACCTTTGCAGCCAATACAAGACGGGCGTTTTT9830.21169103015789612No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC9640.20759934188424398No Hit
AGCGCCGGTCGGAGGCGGGCAAACGTAGAAGTTTGCGTCGGTGT9600.20673793382663302No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC9370.2017848374953699No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC9310.20049272540895346No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA9010.1940321649768712No Hit
AACCGCCGGCGGGCCGGTATCGCTTGGGGATACGGTTGGCGGTG8700.18735625253038618No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG8320.17917287598308193No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8270.17809611591106822No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG8100.1744351316662216No Hit
GTGACGACGGCGGCGTTCACCGCCGTCCGGACCTTCGCCTTCAC8090.17421977965181887No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG7820.1684052752629448No Hit
CTGGGAGGTCAGGAACACCAGGTAGCTGCGCTGAGCTTCACGGA7820.1684052752629448No Hit
GTGCGGGTAGATCGGCAGGTTGCCCAGCAGAGTGCCGTCGAAGT7660.16495964303250094No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7550.16259077087407076No Hit
ACGAGAAGCCGCGGAGGTCGGAGCTACGGCCGGATCCGGTTTGC7380.15892978662922413No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7220.15548415439878024No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG7210.1552688023843775No Hit
TTCCGGCAGAACCGGCCACAGTACGCAAGGCAGCGGAGCCTGGG7120.15333063425475282No Hit
CAGGTCATCTTCGTCCGCATCGCCGTCTTTGTTCGGCACCTGGG6830.14708542583707326No Hit
TACCGGCAGCGGGCGGCCTGCGATATCCGCGTTGATCTTCAGCA6770.14579331375065682No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG6750.14536260972185133No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT6590.14191697749140747No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA6580.1417016254770047No Hit
ACCCTCACCGGAACGAGCCGGACGAGAACCTTCACGGTGACGGC6320.1361024731025334No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5820.12533487238239627No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5700.12275064820956336No Hit
ACCCTGGTGCAGACCCAGGACTGGAGACAGTTCCGGCATGGACG5500.11844360792150849No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG5410.11650543979188381No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG5370.11564403173427285No Hit
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT5340.11499797569106461No Hit
TTGTGGCACCGGTGGCAGCAGGGTGGCCATGACACGCTGTTCCA5320.11456727166225912No Hit
TACCTGGATGTCCAGATCGAAGTAGAAACGGCGTGCCATGGCCG5190.11176769547502348No Hit
GCTGGCAGCGGAGGTAGGTGCTACCGCCGGGTCCGGCTTACGGG5050.10875276727338509No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT4980.10724530317256586No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT4840.10423037497092748No Hit
CGCGGTGATACGATCACGCTGTTTTTCATCTTCGTCACGGTAGG4790.10315361489891377No Hit
AGACGCTGCGGAGGTCGGAGCAACAGCCGGATCCGGTTTACGGG4750.1022922068413028No Hit
TTTGGAGGTGAACGGTTTACCTTTATCCGGCAGGTCTGCCATCG4740.10207685482690006No Hit
GTGGGAGTTACGGCATACCGGTGCCGCGTTAGATGGACCCGGGG4730.10186150281249731No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG4680.1007847427404836No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)