FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934856

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934856
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415909
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT21210.5099673245830219No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15660.3765246724644093No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC15500.37267767708801686No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10380.249573825043459No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9880.2375519644922327No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7830.18826233623220465No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT7640.18369402922273861No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7390.17768309894712545No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC7140.17167216867151228No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5930.1425792661375445No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5760.13849183355012756No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5450.13103828000836723No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5390.12959565674222007No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5350.12863390789812193No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.12093991714533707No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4920.11829510782406728No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4640.11156286591538053No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4630.111322428704356No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG4370.1050710612177183No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)