FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934857

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934857
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences415909
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG67971.6342517233337102No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21670.52102743629015No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19530.4695738731309012No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15030.3613771281698641No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12270.29501645792709463No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11170.26856836471439666No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8290.1993224479393329No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7910.19018583392040087No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7720.18561752691093483No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7600.18273228037864053No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7050.16950823377229152No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6320.15195631736750106No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6140.14762844756905957No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5680.13656833586193134No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5570.13392352654066153No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5530.13296177769656345No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5310.12767215905402385No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5180.12454647531070498No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT4840.11637161013587106No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4620.11108199149333148No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4420.10627324727284095No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4350.10459018679566925No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4320.10386887516259566No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4280.10290712631849756No Hit

[OK]Adapter Content

Adapter graph