FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934858

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934858
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430626
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT20860.48441106667967104No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC16200.3761965139123044No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15830.36760437131060364No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA10390.24127665305857054No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9820.22804010905054503No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8380.19460041892500685No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8340.1936715386437419No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7470.17346839252622925No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG7440.17277173231528054No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT6540.15187192598681917No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.13608096120531504No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5770.13399098057246892No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5530.12841769888487922No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC5370.12470217775981943No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5120.11889667600191349No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA4870.11309117424400757No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4820.11193007389242637No Hit
TTTCACGACCACTTTAACGGTTTCGTCACCAACAGTTACCAGTA4630.10751789255641786No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC4330.10055129044693074No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)