FastQCFastQC Report
Sun 21 May 2023
EGAF00007934859

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934859
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences430626
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG61131.4195612898431587No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG21110.49021656843757694No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC20930.4860366071718847No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT15540.3608699892714327No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12280.2851662463483394No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT11400.26473088016051055No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9350.21712576574568188No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA9000.20899806328461357No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA7970.18507939604204113No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG7540.17509393301844292No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG7170.16650179041674215No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6420.14908528514302433No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA6340.14722752458049443No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6260.14536976401796456No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5720.13282988022088774No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5650.13120433972867407No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5620.13050767951772535No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5280.1226121971269733No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5230.1214510967753921No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4690.1089112129783153No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG4600.10682123234546914No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4540.10542791192357172No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT4500.10449903164230678No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC4440.10310571122040936No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC4350.10101573058756322No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)