FastQCFastQC Report
Sun 21 May 2023
EGAF00007934861

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934861
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences413901
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG21900.5291120340371248No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12010.2901660058806333No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT11020.26624724269813316No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9250.22348339337184497No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT8500.20536311823358727No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG8250.1993230265208347No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG7770.18772605043234977No Hit
CGTCGCCAGCGTGCAATCGACAAACGCCAGC7530.1819275623881073No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC6610.15970002488517784No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC6210.15003587814477376No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG5470.13215720667502617No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG5290.12780834064184432No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC4810.11621136455335938No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG4760.11500334621080888No Hit
CCGGATCCGGCTGTTGCCCCGACCAGCGCGG4680.11307051686272804No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG4590.11089608384613713No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG4520.1092048581665664No Hit
GCTCCGACCAGCGCGGCGTCTCGCAAACCTG4350.10509759580189465No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)