FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934862

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934862
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418588
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG13960.33350215486349344No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT13330.3184515561841238No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG12930.30889562051468267No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG11820.28237789903198374No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10000.23889839173602684No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG9870.23579271264345847No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG9460.22599787858228138No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8820.21070838151117569No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8220.19637447800701407No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG8210.196135579615278No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG7170.17129014687473124No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG6570.15695624337056963No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA6480.1548061578449454No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6380.1524171739275851No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5970.14262233986640802No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5970.14262233986640802No Hit
AGACGGCGGCGGGGTAGGTTTGACCGGAACTGGTTTCGGCACTG5830.13927776238210365No Hit
AACGCAGGCACCGCGACGACGACGGGACGGTGGTGGGGTCGGTT5540.13234970902175888No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5290.1263772492283582No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA5110.12207707817710972No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT4770.1139545328580848No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT4590.10965436180683631No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC4470.10678758110600399No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)