FastQCFastQC Report
Fri 21 Apr 2023
EGAF00007934863

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934863
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences418588
Sequences flagged as poor quality0
Sequence length31
%GC56

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG69461.6593882289984423No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC14460.34544707445029477No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT13660.3263352031114127No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC12990.31032901086509884No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12880.30770112855600257No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC11860.2833334925989278No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11410.27258306497080664No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC11260.26899958909476623No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT9860.23555381425172245No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9140.21835313004672854No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA9010.21524745095416017No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG8400.20067464905826254No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7620.18204057450285246No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7570.1808460825441723No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6850.16364539833917838No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG6720.16053971924661004No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6720.16053971924661004No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6580.15719514176230567No Hit
GCAGAAGCGCAGTCCACTCCGGAGCGTCCTG6150.14692251091765648No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG5360.12804953797051039No Hit
GACAAAGCTGAAGCACAGTCCACTCCGGAAC5180.12374936691926189No Hit
CCGCCAGCCCCGCAGGCGCCTTACCAGGGTT5090.12159928139363765No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC4800.11467122803329288No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG4510.1077431746729481No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC4270.10200961327128345No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC4250.1015318164878114No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)