FastQCFastQC Report
Wed 31 May 2023
EGAF00007934869

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934869
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences550597
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG51030.9268121693361933No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC12680.23029547927068253No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA8540.15510436853088558No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG8170.14838439003481674No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT8160.14820276899438245No Hit
GGCGAGTTCCGCCTGCACAACCCGATCAAAG7980.14493359026656522No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT7660.13912171697266784No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7210.1309487701531247No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6290.11423963443316981No Hit

[OK]Adapter Content

Adapter graph