FastQCFastQC Report
Sun 21 May 2023
EGAF00007934874

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934874
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536399
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT22040.4108881634753234No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT16000.2982854181309063No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT14490.270134731794802No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13720.2557797460472521No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG11610.2164433565312389No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC11280.21029121978228893No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10570.19705480435272998No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG10060.18754695664980733No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9630.1795305360375392No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9270.17281911412959383No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8690.16200626772234847No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8430.15715912967772125No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8300.15473556065540764No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8140.15175270647409855No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC7860.1465327116568077No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7790.145227712952485No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7520.14019414652152595No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6770.12621201754663974No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6320.11782274016170799No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6250.11651774145738528No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA6210.11577202791205801No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5740.10700989375446264No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG5580.10402703957315357No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)