FastQCFastQC Report
Sun 21 May 2023
EGAF00007934875

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934875
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences536399
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA33390.622484381961935No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA22330.4162945866789461No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20070.3741617713679556No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA17090.31860611224107427No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT14740.2747954414530974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14530.2708804453401293No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC12380.2307983422787887No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11420.21290121719093436No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10630.19817337467072085No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10620.19798694628438904No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10250.19108909599011184No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC10060.18754695664980733No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8590.1601419838590303No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8520.1588369851547076No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC8460.1577184148367167No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7750.14448199940715775No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7080.13199129752292604No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6670.12434773368332155No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6420.11968702402502614No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6390.1191277388660307No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA5620.10477275311848085No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5380.10029847184651723No Hit

[OK]Adapter Content

Adapter graph