FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934876

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934876
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520386
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGCGCACCGTGGTTGATCGGCTGGGTCAGCGGCAGGTCGAAGT20780.3993189670744409No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT15470.29727932726860445No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT13800.26518776446714554No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC13540.26019147325254716No Hit
CTGAACAACATCGGTACCCTGAGAAGGCGGTGCGCCCTGAAACA10890.20926773587298658No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10810.20773041549926402No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC10670.20504010484524948No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG9750.1873609205474398No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG9550.18351761961313331No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA8950.17198771681021394No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG8220.1579596683999954No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC7910.15200255195182039No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA7600.14604543550364538No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7460.14335512484963087No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7450.14316295980291552No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG7110.13662934821459455No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC6790.13048006671970422No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG6490.12471511531824454No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6460.12413862017809857No Hit
TGGACCGGTAACCGGACGGCCACGACGGCCGTTATCGAACAGGG6320.12144830952408406No Hit
GATAACGAAGCTAGCGGAGGTCGGGGTAATGACCACAGAGGACG6190.11895016391678485No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5860.1126087173751792No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5750.11049490186131063No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)