FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934877

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934877
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences520386
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47810.9187410883459585No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA32190.6185792853766242No Hit
TCTGCCGCCCACTTTCTGCCGCAACAGCCGA20920.4020092777284554No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19470.3741453459547336No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA14960.287478909886123No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA14030.26960756054159796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT13350.256540337364956No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11080.2129188717605777No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10690.20542443493868015No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC10210.19620051269634464No Hit
GTGGCACAGTCCCAGTACTTCGACCTGCCGC10130.19466319232262205No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC9950.19120422148174626No Hit
ACCGAACCTACTACTGATTACGGCGGTGACT8030.15430853251240426No Hit
GGCTACCAGGAACCACCGGCACCACAAGCCC7930.15238688204525103No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7660.1471984257839373No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA7510.14431595008320747No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7050.13547635793430263No Hit
AACGACCTGTACCGCCGCGTGATCAATCGTA6390.12279346485109131No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6260.12029531924379211No Hit
ACCGATTGCGACCTGGATCCGATGGAAGGCA6260.12029531924379211No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6170.11856583382335421No Hit

[OK]Adapter Content

Adapter graph