FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934879

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934879
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences542382
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG49530.9131940219255064No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20020.369112544295349No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17880.3296569576423996No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12490.23028050340903644No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC11040.2035465778731595No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10300.1899030572548499No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9760.17994697464148884No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7950.14657566069670452No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7310.1347758590808692No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7130.1314571648764155No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6970.1285072144724567No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6950.12813847067196182No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG6320.11652304095637392No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG5510.10158891703633234No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)