FastQCFastQC Report
Wed 31 May 2023
EGAF00007934881

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934881
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences548146
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG48950.8930102563915453No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20300.3703392891674846No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA17350.31652151069240675No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT12550.22895359995329712No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10770.19648049972087728No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10730.19575076713138473No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG10130.184804778288996No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8080.14740598307750125No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG7380.1346356627613811No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA7350.13408836331926166No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA6540.1193112783820369No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6030.11000718786600651No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5920.10800042324490192No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)