FastQCFastQC Report
Wed 31 May 2023
EGAF00007934882

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934882
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557030
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAGCTCGTCTTCGTCGCCCGCTTCATCTTCGTTGTGCAGCGGGG17240.3094985907401756No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT15780.2832881532412976No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG15300.27467102310468017No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG13520.2427158321813906No Hit
ACCCAGCGTGATAGAACGCACGCGGTCAGAGTAACCACATTCCT13170.23643250812344038No Hit
CTTTGGGTGTTTCTGTTTCTGACGCGCTTCGCTAGAGGTACGTT12540.22512252481913003No Hit
ACCCAGGGTGATCTGCTGAACACGATCGGAGTAGCCGCACGCTT11820.21219682961420389No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT8990.16139166651706371No Hit
ACCGTCTTTGTTCGGCACCTGGGTGTAGTTGGTGTTACGACGTT8920.16013500170547368No Hit
GATTGCCGGAGATGGAGTTTCCGGACGCGCCGGAGATTCCCAGG8380.15044073030177907No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG8330.14954311257921477No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG8160.1464912123224961No Hit
AATCAGCGGGTTGAATGCCTGTTTTACCTTTTTCGGGTGTTTCT7650.13733551155234008No Hit
GCCCAGGGTGATCTGCTGGACACGATCAGAGTAACCGCACGCTT7290.130872663949877No Hit
GATGAGCGGGTTGAACGCCTGTTTAACCTTTTTAGGGTGTTTCT7090.12728219305961977No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG6900.12387124571387538No Hit
ACGGCGGAAGGCATACGGGTTGTCTTCGTCTGGCGCATCAATAT6850.12297362799131106No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG6610.11866506292300236No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA5860.10520079708453763No Hit
TTTCGGGTGTTTCTGCTTCTGACGGGCTTCGCTGGAGGTACGTT5600.1005331849272032No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)