FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934889

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934889
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences557005
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA24890.44685415750307445No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19520.35044568720208974No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11400.204666026337286No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10460.18779005574456245No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9990.17935207044820065No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA8710.15637202538576853No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8650.15529483577346703No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6160.11059146686295455No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5880.10556458200554754No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)