FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934891

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934891
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences563160
Sequences flagged as poor quality0
Sequence length31
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGTCGCCACACCCAGAAAGCACCGAAACGTA25660.45564315647418135No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19740.3505220541231621No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10900.19355067831522127No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA10870.19301797002628027No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10410.18484977626251864No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9040.16052276440088076No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT8820.15661623694864693No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG6610.11737339299666169No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5890.10458839406207827No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)