FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934892

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934892
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543992
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT22480.4132413711966353No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19290.3546008029529846No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT18040.331622523860645No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12060.22169443668289238No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT11130.20459859703819172No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA10380.190811629582788No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT9780.179782055618465No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA9670.17775996705833907No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9590.17628935719642935No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC9430.17334813747260988No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC9120.16764952425770968No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA9110.16746569802497097No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA8110.14908307475109928No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT7830.14393594023441522No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG7690.14136237297607318No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT7670.14099472051059575No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT7270.13364167120104709No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7050.12959749408079532No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT6480.11911939881468846No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6370.11709731025456258No Hit
ATCGCTAATCTGTACTTTTTTAGCTTCGCGGCCACGAGAACGGG5820.10698686745393314No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5580.10257503786820395No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)