FastQCFastQC Report
Wed 31 May 2023
EGAF00007934893

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934893
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences543992
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25150.4623229753378726No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG23210.42666068618656156No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT20440.37574081971793705No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA18900.3474315798761746No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT18050.3318063500933837No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13490.24798158796452888No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG12260.2253709613376667No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC11480.21103251518404684No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA11200.20588538066736276No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10620.19522345916851716No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10410.19136310828100414No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10290.18915719348813953No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9910.1821717966440683No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA9810.18033353431668112No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9420.1731643112398712No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG8690.15974499624994484No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA8570.15753908145708026No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG7620.14007558934690217No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA7370.13547993352843424No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA7280.1338254974337858No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC7120.13088427770996633No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG6700.12316357593494022No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC6670.12261209723672407No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6210.1141560905307431No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC6030.11084721834144619No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5940.10919278224679775No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG5910.10864130354858159No Hit
CAGAACCTGACCCTGCGTATCCAGGTTTCTA5770.10606773629023955No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5650.10386182149737495No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)