FastQCFastQC Report
Sun 21 May 2023
EGAF00007934898

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934898
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472034
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA34340.7274899689429152No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA28760.609278145218353No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT13120.277946080155243No Hit
GCGAGTCTGATCGGTGATAACATAACGAGTTTCGATCATATCTT10430.22095865975755982No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10310.21841647000004236No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG9460.20040929255096032No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9290.1968078570611439No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG8610.18240211510187823No Hit
ATACAGGCCGGTCTGCGGGCAAACGCTCACACCTTTGACACCGG8500.18007177449082057No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8220.1741399983899465No Hit
ATCAGAGGATTTCGCATCGTTTTCTTTTTTATCCGGGGTTGCCA8140.17244520521826817No Hit
TGGGATCTGCAGAGTCTGGTTCGGCATGATCAGATAACCACGCA8010.16969116631429093No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT7070.14977734654707076No Hit
CCAGGCAGAACCGTGGTGGTTACGGGATGCGCTACCAGAATGGC7000.14829440252185222No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG6820.14448111788557602No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA6690.14172707898159878No Hit
ATCGGCGTCTGCGGTGACACCCATATCTTCCGCAGTCATCTGAA6580.13939673837054112No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA6530.13833749263824216No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA5990.12689763872941356No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG5800.12287250494667756No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG5750.12181325921437863No Hit
AAAGCCATCCTGTTTAGCTTTATTGATGATGTCCTTGATGGAGT5630.11927106945686117No Hit
GGCATCGGTGAAGCCAGTGCCGAATGCGTCACCCAGACCTTTGA5590.118423672871022No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT5190.10994970701263046No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5100.10804306469449235No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA5030.10656012066927383No Hit
ACCAGACACGAAGACGGCGTTCTCATCTTCCAGTTTCAGCAGTT4990.10571272408343467No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA4960.1050771766440553No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG4790.1014757411542389No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)