FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934899

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934899
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences472034
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT73501.5570912264794485No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43120.9134935195346097No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA14040.29743620162954365No Hit
ACCCAGAACCCAGTGGAAAACTACATCGACT10810.2290089273230318No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC10650.22561934097967518No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT10120.2143913362173064No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG9740.20634106865183438No Hit
TCTGGCTACGAAATTGACCACATCGACCTGG8760.18557985229877508No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG8550.1811310202231195No Hit
ACTCGTCTGGAAAACATCAAAACCGACCGTA8210.1739281492434867No Hit
GTGGGCGGCTCTGATGCACAGAACACCTCTA8060.17075041204658986No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG7930.16799637314261262No Hit
CGTGACACCACTCACATTTCCCAGAGCGCAC7710.16333569192049724No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC7580.16058165301652No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC7260.15380248032980673No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG7220.1529550837439676No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC7100.15041289398645014No Hit
GCTGAAGAGACTACCATCGAAAACGGCATCT7010.14850625166831202No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA6990.14808255337539245No Hit
CGTTCTCGCCACGAGAACACCTCTCAGGTTC6800.14405741959265647No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6580.13939673837054112No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC6250.13240571653736807No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG6230.1319820182444485No Hit
AGCGGTGACTGTGGCGGCATCCTGCGCTGCC5520.11694072884580348No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5510.1167288796993437No Hit
AAAGTGTACAGCCAGAACGGTCTGGTCCTGC5500.11651703055288391No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5350.11333929335598707No Hit
TCTACCCAGCACACTGTTCAGTCCGGCGAAA5160.10931415957325108No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA5160.10931415957325108No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5150.10910231042679129No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5020.10634827152281404No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG4860.10295868517945742No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG4790.1014757411542389No Hit
ATGGAACGTCAGCTGCCAAAAAACGTTCGCC4780.1012638920077791No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG4740.10041649542193995No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)