FastQCFastQC Report
Sun 21 May 2023
EGAF00007934900

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934900
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524829
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC19530.37212120519254843No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC14970.2852357625055018No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14490.2760899264331811No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14000.2667535521093537No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG13340.25417802750991275No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13120.24998618597676575No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG12730.2425551941680052No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12640.24084034990444506No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12250.2334093580956845No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11110.21168799742392283No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10380.1977787050639351No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG10060.19168148101572133No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9570.18234510669189394No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT9010.17167496460751977No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8690.16557774055930596No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8550.16291020503821244No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8230.15681298098999863No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7930.1510968334447982No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7830.1491914509297314No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7560.14404691813905102No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7310.13928346185138396No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT7130.1358537733242637No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6970.13280516130015682No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6500.12384986347934279No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT6150.11718102467660894No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG6040.11508510391003546No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5640.1074635738497682No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5530.1053676530831947No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG5520.10517711483168804No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5430.1034622705681279No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT5250.10003258204100765No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)