FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934901

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934901
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences524829
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT30850.5878105058981116No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC25820.49196976539025095No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16410.31267327072246387No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA15650.2981923636079561No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG13910.2650387078457936No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13840.2637049400852468No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG13680.2606563280611399No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG13120.24998618597676575No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11610.2212149099992569No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11340.2160703772085765No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG10460.19930301107598855No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG10070.191872019267228No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9990.19034771325517455No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG9790.18653694822504094No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9740.1855842569675075No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC9480.1806302624283338No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8860.16881689083491958No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8860.16881689083491958No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8760.16691150831985277No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG8050.15338329246287838No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG8010.15262113945685166No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7750.14766714491767793No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7360.1402361531089174No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG7050.13432946731221027No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6800.12956601102454324No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6440.12270663397030272No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6420.12232555746728933No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG6280.11965802194619579No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC6280.11965802194619579No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC6220.11851479243715572No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT6060.11546618041304883No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5890.11222703013743524No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5450.10384334707114126No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5380.1025095793105945No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)