FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934902

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934902
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511481
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC18310.3579800618204782No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA14440.2823174272358113No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA14060.27488802125592154No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC13910.2719553610007019No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG13320.2604202306635046No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12840.25103571784680173No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA12320.24086916229537364No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA12290.2402826302443297No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG11740.22952954264185768No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT10990.21486624136575944No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG10420.2037221323959248No Hit
CATGGTGTCGCCCGGCACTACCTGGGAAGTGTGGCCGGTCTCAG9540.1865171922319695No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA9490.18553963881356295No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT8610.1683346986496077No Hit
CAGAGCGAAAGTAATGTTTTTGCCATCACGCTTAACCTTCAGGT8360.16344693155757498No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8170.15973222856763009No Hit
CATGGTGTCACCCGGGACAACCTGGCTGGTGTGACCAGTCTCAG8120.15875467514922353No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA7960.15562650421032256No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT7790.1523028225877403No Hit
GATGGTGGATTCGCTACGGGAACGGCGCTGCACAACGTGACGGG7450.1456554593425758No Hit
CAGAGCACGCAGGCCTTCTGCGATGTTTTCGAATTTCGGGTTGG7110.13900809609741124No Hit
GTCGGACGGGGTTTTTGCACCACCCATGCCTGCGGAGCCCGGCT6920.13529339310746635No Hit
GATGGTGGATTCGGAACGGCTACGACGCTGAACGACGTGGCGGG6820.13333828627065328No Hit
ACCCTGAACTGGGGTAGAGGTTACAGTTTGCGCACGAGCAGAGG6300.12317173071922514No Hit
CACGTGACGGGTTTGGACCGTGTCAGACGGTGCCAGCGGGTTGG5910.11554681405565408No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT5800.11339619653515966No Hit
AACGTGACGGGTCTGAACGGTGTCAGACGGGGCCAGCGGGTTGG5520.107921897392083No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5450.10655332260631382No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC5410.10577127987158859No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG5150.10068800209587453No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)