FastQCFastQC Report
Sat 22 Apr 2023
EGAF00007934903

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934903
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences511481
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG47090.9206598094552878No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT31590.6176182497492575No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC24440.4778281109171211No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA16030.3134036259411395No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA14450.2825129379194926No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT13680.26745861527603176No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG13410.2621798268166364No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12810.2504491857957578No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG12790.2500581644283952No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG11550.22581483965191276No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11020.21545277341680336No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG9900.19355557684449667No Hit
CAGGGTGCTCTGACTCTGTCTCTGCCGAAAC9720.1900363845382331No Hit
CAGAAACAGCTGCTGCAGGGTGATGTTGAAG9500.18573514949724426No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC8900.1740045084763657No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC8850.17302695505795915No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG8590.16794367728224507No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG8490.165988570445432No Hit
CAGAAACAGCTGCTGCAGGGCGATGTGGAAG8040.15719058967977304No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG7770.1519118012203777No Hit
CAGGACAGCCTGCCGGATACCAAAGCATCTG7740.15132526916933375No Hit
TCTATCCTGAAACCAGGTGCTTCTGCTGCCC7560.14780607686307018No Hit
CAGGGCGCGCTGACCCTGTCCCTGCCGAAAC7180.1403766708831804No Hit
CAGGACTCTCTGCCGGACACTAAAGCCTCTG6780.13255624353592801No Hit
CAGACCCCGGAACAGAGCACCCCGTCCCGCA6450.1261043909744448No Hit
GAACAGGGCCCGGCGGACGACCCGGGTGAGG6400.12512683755603826No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG6200.12121662388241206No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC6010.11750192089246717No Hit
GGTTCCCGTGAACGCGCACGTGGTCGTGGCC5890.11515579268829144No Hit
ATTGAGCAGAAACAGCTGCTGCAGGGTGATG5800.11339619653515966No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5770.11280966448411574No Hit
CCTCGTCGTCCGCCGCCAGGCCGTCGCCCGT5750.11241864311675312No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG5380.10518474782054464No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA5330.10420719440213812No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG5210.1018610661979624No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG5190.10147004483059976No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)