FastQCFastQC Report
Sun 21 May 2023
EGAF00007934904

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934904
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487662
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA29940.6139498259040073No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA27940.5729378134855699No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20200.41422132542621737No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT15710.3221493575468255No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC11700.23992027264785856No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG10980.2251559481772211No Hit
GAACACTACAACTTTTTTGTTGCCGATCAGATAAATACCGGCCG10570.21674848563144147No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT9950.2040347617817259No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG9500.19480705898757747No Hit
AGGGTGGGTCTTCGGGGTCGGCCACGGCAGTTTACGCGGTTTTT9350.19173115805619464No Hit
GCTAGTTATAGCGGGGCCGAGGTTACTAACCAAAGTGTCGGCAC9060.18578441625552122No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG9030.18516923606924468No Hit
GCGAATGTATGCCAGCCACGCTTCGTCTTCAGCCAGGATATCGC9000.1845540558829681No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC8670.17778707383392595No Hit
GTTGCGCGGCGGACGAGTACGTACCGGAACGCGCAGACCGCTCA8390.17204539209534472No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7610.15605070725215414No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT7140.14641288433382138No Hit
GTCGTGACGTTTCAGCGGGAATGGGCCACCCAGATCGTCGATGG7070.14497746389917607No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT6940.14231168309197764No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6890.1412863827815167No Hit
TTTGTCGATGGTCTGCTCCAGGTTACCAAAGAAGCCTGCTTTTG6810.13964590228477922No Hit
CTGTGCGCCCTACGCGGAGGTGGCCTATTCATCGGTGCAGGATT6230.12775241868343237No Hit
CAGTTCGCGGTTAGCCAGAACTTTCGCTTCTGCCAGTTCAATGG6040.12385627750368083No Hit
CGGATGAGTTTTCGGAGTCGGCCACGGCAGTTTACGCGGCTTCT6010.12324109731740426No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5860.12016519638602147No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG5830.11955001619974491No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA5500.11278303415070273No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG5390.11052737346768869No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG5290.10847677284676682No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA5100.10458063166701526No Hit
GCCTGCGGTCTGGCCGTTCGCGGCTTCATAAGACCAGGACCAGG4990.10232497098400123No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)