FastQCFastQC Report
Wed 31 May 2023
EGAF00007934905

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934905
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences487662
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[FAIL]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT68851.411838527504706No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG45090.9246158199736704No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA23670.4853771669722061No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT19620.40232784182487047No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA15190.31148623431803174No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC11590.23766461196484448No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA11420.2341785909092773No Hit
TCCTACACCAACGGCAAACTGACTATCACCC10590.2171586057556258No Hit
CAGACCGATGCCCTGACCGAAGGTCTGTCTG10410.21346752463796645No Hit
GTGGCAACCAACGAAATGAAGGTTATCAACG10320.2116219840791368No Hit
GACGCACTGACGGAAGGTCTGTCCGATGAAC10070.2064954825268321No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10020.20547018221637117No Hit
CAGACCGACGCCCTGACTGAAGGTCTGTCCG9920.20341958159544932No Hit
GGCCTGACTTCTTATGATGAACCGCTGGTTA8750.17942755433066346No Hit
GCTGGTATCGTGACCGTCCCGCCACGCTCCC8680.17799213389601815No Hit
GGTCGTCAGGGCTCCGATGTCGAACTGGAAT8260.1693796112881463No Hit
GTGAACGCAAAAATTGATCGCCTGAACCAGA8130.16671383048094787No Hit
GAACCGATCTACGCTACCATCGACGACCTGG7340.15051408557566512No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA7140.14641288433382138No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG7120.146002764209637No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6700.13739024160176516No Hit
GACGCCCTGACGGAGGGTCTGAGCGATGAAC6400.13123843973899954No Hit
GGTCGTCAGGGCAGCGACGTAGAACTGGAAT6090.12488157781414175No Hit
ATCAAAGACCTGCAGGCACAGGTGGTAGAAA6070.12447145768995739No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5920.12139555675857458No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT5770.1183196558271918No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA5580.11442351464744024No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG5050.10355533135655434No Hit
GCGGAAGTGAATGTTGACCAGGCTCACCTGG4920.1008895505493559No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)