FastQCFastQC Report
Wed 31 May 2023
EGAF00007934906

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934906
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences534702
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[WARN]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC45600.8528114725585466No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG44890.8395330483147622No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT42240.7899727324752853No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA35970.6727111549984851No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG35150.6573755100972131No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG32480.6074411541381929No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA28950.5414230730388141No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA26970.5043931012040351No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA24250.45352364494615693No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT24110.45090536410935433No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20890.39068490486289564No Hit
GTGCTGGCTACGCGGGGTCCACGGACCAGCATAGCCCGGGTAGG20440.3822690021731731No Hit
GGACTGGTCCGGCAGGGTATCCGGGAAAGCCGCACGTGCCGCAC19950.3731050192443641No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT18880.3530938728488018No Hit
GGCAATATTTAAATATGCTCGTCAGGTGGACGGACCTTCGCCCG16820.3145677405358499No Hit
CGGTTCGCCATCCGGACCGCCTTCCTGGTGATACTCGAAGTAGT15430.2885719522275959No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT14590.2728622672067806No Hit
GTCGCTTGGACGAGTCGGCAGGGTTGCGCCGGTTTCGTTGGCGG14380.2689348459515768No Hit
CGGGTCCTGGGACCACGGAGCCCACGGATGACGGTAGCACGGGT14210.26575550493545935No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC14160.26482040463660134No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC13150.2459313785996686No Hit
GGCAATGCCGGCGCGCCAACGACCATCACGCGCTTTGTCAGTGA12420.23227891423634098No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG10970.20516100556945738No Hit
CGGACGCGTTGGCAGGGTCGCGCCAGTTTCGTTTGCAGTCAGAG10520.1967451028797349No Hit
CGGAGCCTGCGGTGGCGGCGGCTCTTGATAACCCTGATACGGCG10080.188516220249784No Hit
TGTGACATTTAAATTGGAGTATCAGGTAGACGGGCCTTCGCCCG9800.18327965857617887No Hit
GGTGGACGGACCTTCGCCCGGGTCATCCGCCGGGCCCTGTTCGA9720.18178349809800598No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT9450.1767339564841725No Hit
CGGTGCCTGTGGCGGAGGCGGTTCCTGATAGCCCTGGTATGGTG9060.16944017415307966No Hit
TTCCTGGCCTTCTTCACCCTCATCACCGTCACCACCTTCATCGC9040.16906613403353646No Hit
GGTGGACGGGCCTTCGCCCGGGTCGTCAGCCGGACCCTGCTCGA8680.16233341188175843No Hit
CTGGCCGCGGTGTTTACCGAACCAGCCGCCTTTTTTACGACGGC8500.15896705080586943No Hit
GTGCTGGGAACGCGGGGTCCAAGGGCCAGCGTAGCCCGGATAGC8490.1587800307460978No Hit
CTCCTGACCTTCTTCACCTTCATCACCATCACCGCCTTCATCAC8410.15728387026792495No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC8210.15354346907249272No Hit
GTCAGACGGACGAGTTGGCAGGGTTGCGCCGGTTTCGTTTGCGG7680.14363140590459733No Hit
TGGGTCTTGAGACCACGGTGCCCAAGGGTGGCGATAGCACGGGT7670.14344438584482572No Hit
CGGGCCTTCGCCCGGGTCATCAGCCGGGCCCTGTTCGATCGCAC7600.14213524542642444No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT7230.13521550321487483No Hit
ATAATCCCAAGATTCGTCCAGGTCCGCCGGGTCGATGGACGGTG7110.13297126249761548No Hit
CGGACGAGTCGGCAGGGTAGCACCGGTTTCGTTCGCGGTCAGTG7000.13091404184012778No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6740.1260515202860659No Hit
TGACCTATTTAAATACGAGCCTCAGTCAGACGGACGAGTCGGCA6560.12268515921017688No Hit
CGGGATAGTGCCGTTGTCGCCGCCGGTCAGTTTGGTCAGCGGAA6510.12175005891131882No Hit
GTTCAGGCCGCGAATACCGAAGTTCATAGCCAGGTCGTGAGAAC6460.12081495861246078No Hit
TTCCTGACCTTCCTCACCTTCGTCGCCATCGCCACCTTCATCAC6380.11931879813428788No Hit
GCGCACTACAACTTTCTTACCACCCACAACATAAATACCAGCCG6100.11408223646068277No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT6090.11389521640091116No Hit
ATCGTCGAACGGGATATACTGCACGAAGCCGTCGTAAGCGGTAA6020.11258607598250989No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG6000.11221203586296666No Hit
ATAAATACGGCTGCAGTCGATGTCCGGGCTAATGGTGTACGGCA5840.10921971490662088No Hit
GGCGATCAGGTCGGACAGGTTTTTCTTGATAACTTCGCCAGACG5740.10734951430890478No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT5710.10678845412958994No Hit
GTCCACAATTTTGCTCGCAGCAGATGGGTCGGCGATTTTATTCA5700.10660143406981833No Hit
CTCTGGATTTAAATATGTCTATCAGGTGGACGGGCCTTCACCTG5690.10641441401004673No Hit
CGGCGGAACCGGGACAGTAGCCTGCGCGGTGGTCACCGGTGGGG5550.10379613317324417No Hit
GCCCTGACCGCGTGGGCCGGTGGACGGACCCTCACCCGGGTCGT5510.10304805293415771No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)