FastQCFastQC Report
Sun 21 May 2023
EGAF00007934912

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934912
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516716
Sequences flagged as poor quality0
Sequence length44
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT20020.38744687604022326No Hit
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT19470.37680273109406326No Hit
TTTCAGGGACGGTACGCCGACACGAGAACCGCGACCTTTAACTG15280.29571369959513544No Hit
CAAAGTGTCGGCACGTACGATGTAATCGCGTTTCCCCAGTAGAA15070.29164957152478344No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC14640.28332778547596743No Hit
GGTAGAAGCGGCGCGGGAGCTACCAGACAGGCGACCCGGTGCGG14280.2763607087839355No Hit
ATCGGTGCAGGATTGCGTAATTTAGTAGCGCCGTCCGTAAGAAA13520.26165243576742353No Hit
TACACCGACACGGGAACCGCGACCTTTAACCGGGGATGGCGGAG13140.2542982992591675No Hit
TGCCGCCAGTTCAGATGCGCTCAGATCGGATTTCGGGATATAGT12910.24984711137259152No Hit
GGCGCCCGCGGTTCAACCAATGGTAACACAAGAACTGAGCCTTC12560.24307356458867155No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA11840.22913941120460754No Hit
AGAACTGAGCCTTCACTGGTTCAGCTCCCTCGGTCGAGTACGCT11210.2169470269935516No Hit
AATAGAGGATTCGGAACGGCTGTGGTAGTTGTGCACGTGACGAG10700.2070770016798396No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG10680.2066899418636156No Hit
ACCGCTGAACAGATCGCCGCGGGTTTCGGTCAGTGGACGCACGT10320.1997228651715836No Hit
TTCCTGGTGATATTCAAAGTAGTCTGCTTCACCGACCGGGTGGA10270.1987552156310236No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT9810.18985283985787163No Hit
TTTCTGCAGGATGTTCTGTACCGCGTCGGACGGGGTTTTGGCAC9550.18482106224695963No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA9520.18424047252262366No Hit
ACGCGGATCTTGACGGTTCGGCGGGTAGCCGTCGGAAGAGTCGG9130.17669280610625565No Hit
CAGGAAGTTCTCGATAGAAGATTCGGAGCGGGAGTGGTAGTTAT8860.17146749858723168No Hit
CAGGCTAAACGCTGCGTGACGCTGTTGCTGCTGCGGAATGTTCA8830.17088690886289565No Hit
AATCGGCAGGCTTGGGGACGGGGTCGCCAGAGAGTTGTTTGGCA8710.16856454996555167No Hit
TGGTGCCTGAGACTCGTTCAGTTTCTTAGCTTCGCCCAGGACGT8360.1617910031816317No Hit
CTGACCACGGTGTTTACCGAACCAACCACCTTTTTTGCGACGGC8170.1581139349275037No Hit
TGGCGGCGGTTCCTGGTAGCCCTGATACGGTGCCTGCGGCGCCG7970.1542433367652637No Hit
CGAGATGTTTCCATCCAGAGGTCTCCGCAGCGGAAAAAATTGGC7930.1534692171328157No Hit
TTCCTGGTGGTATTCGAAATAGTCTGCTTCGCCGACCGGGTGGA7650.14805037970567972No Hit
AACCGTGGATTCCGCCTTCAGGCGGCCACGGGTCATAACACCCG7520.14553449090022372No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT7360.14243801237043172No Hit
GGACGCCATAGCACCACCGCCAGTCACACGCGGGGTTTTACGTT7310.14147036282987174No Hit
GCTCAGCTGAGACGGCTGCATGTTTTTGCCGGCCAGGTGTGCTT7040.13624505531084774No Hit
ACCACCTTTTTTACGGCGGCCGCCATCACCCTGACCACGTGGAC6990.13527740577028774No Hit
TTTCAGGATAGACGGGCTTGCAACCGGCGGAGCGTTGGATACAG6900.13353563659727974No Hit
AGAGGACGGACGGCTACCCTGTTTGCCGTTCCAGTAGGCCTGTG6730.13024562815937574No Hit
CATCGGAGAAGACAGTTTTGCTTTGCGAATACGGCTCGGGGTGG6670.12908444871070376No Hit
CGGAGACAGCTGAGAGTATGGGATGAAATGGTAGTGATCGCCGT6530.12637502999713576No Hit
ACCCTGACCGCGCGGGCCGGTGGACGGGCCTTCGCCCGGGTCAT6520.12618150008902376No Hit
GTGCTGGGAACGTGGGGTCCACGGGCCTGCATAACCCGGGTAGG6500.12579444027279976No Hit
ATCGCCCGGAACTACCTGGCTAGTGTGACCGGTCTCGGCAGCGG6370.12327855146734376No Hit
GGCCGGGTAGGTTGGAGTGGTGGAAGCTGCACGGGAAGAGCCGG6340.12269796174300776No Hit
GGTTGCCAGCGGACCAATGATAGTCGGCGGGGTTTTCGGACGGC6150.11902089348887977No Hit
GTTCTGGGACGCAGCCATGTAGTCCTGCGGTGCCGCACGACGCT6060.11727912431587179No Hit
ATACGGATAAGAACTACGGGCAGTGGCTGTAACCCTCTTAACCG5930.11476323551041578No Hit
TTCCAGTTCGGACATACGGTCGTACGGAATAAAGTGGAAGTGAT5910.11437617569419178No Hit
GAAGATGTAATCCCAGGACTCATCCAGGTCAGCCGGATCGATAG5670.1097314578995038No Hit
GTTCGGCAGGGTCGGCTGGCCGATCTGGTTGGATTTCGGGATGT5670.1097314578995038No Hit
GTCACCCGGAACGACCTGGCTGGTGTGGCCAGTTTCTGCTGCGG5480.1060543896453758No Hit
AACCCTCTTAACCGCTGTATCGGCGAGAAGCTCTTCTGAGGGGC5360.1037320307480318No Hit
CTGGCCACGGTGTTTGCCGAACCAGCCACCTTTTTTACGACGAC5190.10044202231012782No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)