FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934913

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934913
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences516716
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ATGACCCAGGGTCGTCGTGGTAACGTTTACT33780.6537440296023348No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA26150.506080709712879No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20250.39189806392679927No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC19970.38647922649966326No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG19680.38086685916441526No Hit
TCCGCGCCGCCGTCCCCTGTCAAAGGTCGTG15250.29513310987079944No Hit
TCTGCGTCCGCCTCCGTTCTGTCTCCGACCG15170.29358487060590344No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA13350.25836242732951953No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA13230.2560400684321755No Hit
TCTGGCGCTGGCACCTCTTCTGCCTCTTCCG12580.24346062440489552No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGTA12140.23494530844796754No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG11550.2235270438693596No Hit
TCTCACGAAGAACAGCCGCGTTACGAAGATC11260.2179146765341116No Hit
ATGGGTCGCGTAGCAGACACTATCGCTCGTG11000.2128828989231996No Hit
CCGACCAGCGGTCCGCTGAACATCCCGCAAC10990.21268936901508761No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG10970.2123023091988636No Hit
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG10740.2078511213122876No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT10520.2035934633338236No Hit
CGTCGTCATACCCAGAAAGCACCGAAACGCA10480.2028193437013756No Hit
GAAAGCGTCGAACGTGCTATGGGTCGTGTTG10260.1985616857229116No Hit
CCGCAGCAGCAGCAGCGCCACGCGGCTTTCT10200.19740050627423963No Hit
ATTGCTGCCGTTGGCTCTCCAGTGAAGTCTA9820.19004636976598363No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC9770.18907872022542366No Hit
TTCACTCCGATCAAGAAACCGGGTACCTCCG8940.17301573785212768No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA8860.17146749858723168No Hit
GATGGTTACATCTTCAACCCGAAAGACATCG8750.16933866959799967No Hit
TCTCACGAAGAACAACCGCGTTATGAGGATC8480.16411336207897567No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG8080.1563721657544957No Hit
GAACTGGTGACCACCGAACGCAAAACTCCGC8040.1555980461220477No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG8030.1554045162139357No Hit
ATCCAGGGCAAACTGGAATACCGTCACACCT7820.1513403881435837No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC7700.14901802924623972No Hit
GCCGAAGCTGATTATTTCGAATACCACCAGG7490.14495390117588772No Hit
AGCCCGGCTAAATCTGCGCCGCCGTCTCCGG7110.13759976466763174No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT7050.13643858521895974No Hit
GGCCGTCGTCCGTTCTTCCACCCGGTTGGTG6950.13450328613783974No Hit
ATTGAACAGAAACAGCTGCTGCAGGGTGACG6810.13179386742427174No Hit
GAAGAGGAAGATGACGACTCCAGCGATACTG6760.13082621788371177No Hit
GGTTACCAGGAACCGCCGGCACCACAGGCGC6660.12889091880259176No Hit
CTGCCGCAGTCTCCAGGCCCAGCGTTCCCGC6400.12385914119167976No Hit
TATCACCAGAACCAGGGTGAAAACATTTCCA6380.12347208137545576No Hit
GTGCCGGTCAGCGGCTCTGCTCCGGGTCGCC6250.12095619256999976No Hit
ATCGAGAAAACCGATGAACTGGCAACCCTGC6200.11998854302943977No Hit
ATCGAACAGAAACAGCTGCTGCAGGGCGATG5960.11534382523475178No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG5960.11534382523475178No Hit
CCGGTAGGCGAAGCAGACTACTTCGAGTATC5910.11437617569419178No Hit
CCTGTAGGTGAAGCGGACTACTTCGAGTATC5720.11069910744006378No Hit
AGCCTGGGTTCCCTGAGCTCTAACCCAAGCT5680.10992498780761578No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5540.1072155690940478No Hit
GATGGCGAACACCTGGAAGGTGGCGACGGCA5460.1056673298291518No Hit
ACTCCGTCTGACGCAGGCGAAACGGTCGCGG5220.1010226120344638No Hit
TCCCCGCCTCGTCGCCCGCCGCCGGGTCGTC5210.10082908212635182No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)