FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934914

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934914
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences476410
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
TGCTGGTTTCGCGGCCGGTTTTGCGGTCGGTTTCGCAGCCGGTT17770.37299804789991814No Hit
AATATCAACGGTCTGGACACCCAGGCCCGGTGCCACTTTCTTGA10090.21179236372032492No Hit
GGCTGCCGGTTTAGCCGCCGGCTTGGCCGCTGCGGACTTAGCAA7060.1481916836338448No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT7010.14714216746080055No Hit
CGGCGGCGGTTCCTGATAACCCTGGTACGGGGCTTGCGGAGCCG5560.116706198442518No Hit
CGGGCAGGACAGACCAGAGGTCAGCTTACAGCGGCATACGTTTG4900.1028525849583342No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)