FastQCFastQC Report
Sun 21 May 2023
EGAF00007934921

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934921
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences503281
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG44390.8820122357092758No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT19430.3860666307688945No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13220.2626763180012756No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8940.17763436330797308No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7510.1492208130249304No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT6950.13809382829870392No Hit
GGTGACGTTGCTAAAGCGATCAATGACGCGG6490.12895380513073212No Hit
GCACGTCGTCAGGAAGCAGAACGCCAGGCCG6470.12855641281908117No Hit
GAAGAGGCTCCGGCAGTTGATCCAGTGCAGG5840.11603855500207638No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT5590.11107115110643953No Hit
GCGCCGGTTTGCCGTAACTCCCACACCGCCA5460.1084881010807084No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG5350.10630244336662818No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5040.10014286253603852No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)