FastQCFastQC Report
Sun 21 May 2023
EGAF00007934928

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934928
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485959
Sequences flagged as poor quality0
Sequence length44
%GC54

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
ACCCTGACCACGCGGACCGGTGGAAGGACCTTCGCCCGGATCAT12490.25701756732563863No Hit
GGCCAGTTCGGAAGCGGACAGGTCGCTTTTCGGGATATAGTGAT11770.242201502595898No Hit
CGGACCTTCGCCCGGGTCATCTGCCGGGCCCTGTTCGATGGCAC10830.2228583069765145No Hit
CATATCCGGTTCACCGTCCGGGCCACCTTCCTGGTGATATTCGA7060.14527974582217842No Hit
GGTGGATGGGCCTTCACCAGGATCGTCAGCCGGGCCCTGCTCGA6760.13910638551811982No Hit
ACGAACAATCACCTTAATTGCTTTGCCGTTAACTTTAACTACGT6310.129846345062032No Hit
GCCCTGACCGCGCGGGCCGGTGGACGGACCCTCACCCGGGTCGT6110.12573077152599293No Hit
CGGTTCGCCGTCCGGGCCACCTTCCTGGTGATATTCAAAGTAAT5250.10803380532102501No Hit
CGCCTGCGGGCACGGACGACCGTGAATGGACAGATCCAGTGCTT5030.10350667443138208No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)