FastQCFastQC Report
Wed 19 Apr 2023
EGAF00007934929

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934929
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences485959
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[WARN]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG43910.903574169837373No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC13810.2841803526634963No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG12700.2613389195384796No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT11530.23726281435265112No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT9300.19137416942581575No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7530.1549513436318702No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA7510.15453978627826628No Hit
GGCCGTCGTCCTTTTTTCCACCCGGTTGGCG7140.14692597523659404No Hit
GACAACATCCGCGTCTATGAAGAAAACGGTA6220.12799433697081442No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC5440.11194360018026212No Hit
CACCCAGGTGTGCCGGTCTCTCCAGCCGTTA5160.10618179722980746No Hit
CCGGTAGGCGAGGCGGACTATTTCGAATACC5120.10535868252259965No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)