FastQCFastQC Report
Sun 21 May 2023
EGAF00007934935

Summary

[OK]Basic Statistics

MeasureValue
FilenameEGAF00007934935
File typeConventional base calls
EncodingSanger / Illumina 1.9
Total Sequences484650
Sequences flagged as poor quality0
Sequence length31
%GC55

[OK]Per base sequence quality

Per base quality graph

[OK]Per tile sequence quality

Per tile quality graph

[OK]Per sequence quality scores

Per Sequence quality graph

[WARN]Per base sequence content

Per base sequence content

[OK]Per sequence GC content

Per sequence GC content graph

[OK]Per base N content

N content graph

[OK]Sequence Length Distribution

Sequence length distribution

[FAIL]Sequence Duplication Levels

Duplication level graph

[WARN]Overrepresented sequences

SequenceCountPercentagePossible Source
GGGGGGGGGGGGGGGGGGGGGGGGGGGGGGG42670.8804291756937997No Hit
GCTGTTGCAGCGGCGCGTGCACAGGGCCGCT20030.4132879397503353No Hit
TCTCCACCGCGTCGCCCGCCGCCGGGTCGTC14780.30496234395955846No Hit
GTAGCTGTTGCTCGCTCCCAGGGTCGTTACA11690.24120499329412978No Hit
CGTGGTGAAAAACGTCCGCGTTCCCCGTCCA8980.18528835241927163No Hit
GAGCGTGCCCGTGGCCGCGGCCGCGGTCGCG7630.15743319921592902No Hit
CAGGGCCGTTATACTACCAACGACGGTTACG7170.14794181367997525No Hit
CCGCGTCGCCCGCCGCCGGGCCGTCGTCCGT7030.14505313112555454No Hit
CAGGCCCCGAAAGCTGACGCGCAACAGAACA6210.12813370473537605No Hit
GGCCGTCGCCCGTTCTTCCACCCGGTAGGTG6040.1246260187764366No Hit
ATGACCCAGGGTCGTCGTGGTAACGTTTACT5730.11822965026307644No Hit
CGTCGCCACACCCAGAAAGCACCGAAACGTA5640.11637264004952026No Hit
GCGCAGGGTCGCTACACTACCGACGACGGCT5440.11224595068606211No Hit
GAGCGTGCCCGTGGCCGTGGTCGCGGCCGCG5250.10832559579077684No Hit
GGTAGCCGTGAACGCGCACGTGGTCGTGGTC4880.10069122046837925No Hit

[OK]Adapter Content

Adapter graph

Produced by FastQC (version 0.11.9)